PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593223.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 290aa    MW: 31917.7 Da    PI: 5.5691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.68.1e-20651147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde+l + v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_013593223.1  6 KGPWSEEEDEQLRRMVEKYGPRNWSAISKSIP-GRSGKSCRLRWCNQ 51
                     79******************************.***********985 PP

2Myb_DNA-binding51.32.6e-1660102347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde ++ a +++G++ W+tIar ++ gRt++ +k++w++ 
   XP_013593223.1  60 PFSAEEDETILSARAKFGNR-WATIARLLN-GRTDNAVKNHWNST 102
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.236156IPR017930Myb domain
SuperFamilySSF466891.65E-31399IPR009057Homeodomain-like
SMARTSM007171.9E-18554IPR001005SANT/Myb domain
PfamPF002491.3E-19651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-26759IPR009057Homeodomain-like
CDDcd001672.68E-18850No hitNo description
SMARTSM007171.8E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129418.10258107IPR017930Myb domain
CDDcd001677.34E-1260103No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2160106IPR009057Homeodomain-like
PfamPF002491.2E-1360102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MADRVKGPWS EEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP  60
FSAEEDETIL SARAKFGNRW ATIARLLNGR TDNAVKNHWN STLKRKFVGG GGDCDLVAVT  120
AEEDRRRKRR SVSSESAPLV DTGLYMSPES PTGVSDSSTI PSPVAAQLFK PMPVSGGFTV  180
PSPVEMSSSE EDPATSLSLS LSLPGADVSQ ESRNNSLLFP RFESQVKINV EESEEGRGGE  240
FMRVVQEMIK AEVRSYMSEI QKNSGGFVVG GLYETGNGGF RDSGFITKVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-4051073105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-4051073105C-Myb DNA-Binding Domain
1msf_C3e-4051073105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667431e-109KC966743.1 Brassica napus MYB transcription factor 77 (MYB77.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593223.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW11e-110MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D3DDR70.0A0A0D3DDR7_BRAOL; Uncharacterized protein
STRINGBra012910.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135981527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-122myb domain protein 77